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Update workflows #2

Merged
merged 17 commits into from
Sep 18, 2024
Merged

Update workflows #2

merged 17 commits into from
Sep 18, 2024

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rcannood
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@rcannood rcannood commented Sep 17, 2024 •
edited by lazappi
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Describe your changes

Checklist before requesting a review

  • I have performed a self-review of my code

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Bug fixes

  • Proposed changes are described in the CHANGELOG.md

  • CI Tests succeed and look good!

rcannood and others added 17 commits September 17, 2024 09:27
@rcannood
use cxg_mouse_pancreas_atlas instead of pancreas
7757cee
@rcannood
update dependencies and remove unnecessary arguments
7f8a1ac
@rcannood
update scripts and test resources
daa60a7
@rcannood
fix paths
628fea1
@rcannood
update benchmarking workflow
ca37020
@rcannood
update benchmark workflow
3ce419b
@rcannood
fix default
492b090
@lazappi
Rename "functionality_name" to "name"
aa35d26
@lazappi
Update benchmark workflow
beaa9dc 
Now runs on local test
@lazappi
Update run_benchmark workflow config
3d31909
@lazappi
Set numpy<2.0.0 for pymde and phate methods
e0ef0e0 
Avoids "numpy.ndarray size changed, may indicate binary incompatibility" error
@rcannood
also create a state.yaml file
85428a7
@lazappi
Update run_test_seqeracloud.sh script
745aea1
@lazappi
Update run full benchmark scripts
e5820f6
@lazappi
Update CHANGELOG
acaadde
@lazappi
Add all methods/metrics to benchmark workflow
b1e970d
@lazappi
Add dependencies to benchwark workflow config
5822df7
@rcannood
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LGTM!

@rcannood rcannood merged commit f4dcca2 into main Sep 18, 2024
42 checks passed
@rcannood rcannood deleted the update-workflows branch September 18, 2024 19:39
@lazappi lazappi restored the update-workflows branch September 19, 2024 10:44
@lazappi lazappi deleted the update-workflows branch September 19, 2024 10:44
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2 participants
@rcannood @lazappi